New R Package Pegas@0.14 (#21359)

1 files changed, 30 insertions, 0 deletions

diff --git a/var/spack/repos/builtin/packages/r-pegas/package.py b/var/spack/repos/builtin/packages/r-pegas/package.py
new file mode 100644
index 0000000000..5c60591cf7
--- /dev/null
+++ b/var/spack/repos/builtin/packages/r-pegas/package.py
@@ -0,0 +1,30 @@
+# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+from spack import *
+
+
+class RPegas(RPackage):
+    """Population and Evolutionary Genetics Analysis System
+
+    Functions for reading, writing, plotting, analysing, and
+    manipulating allelic and haplotypic data, including from VCF files,
+    and for the analysis of population nucleotide sequences and
+    micro-satellites including coalescent analyses, linkage
+    disequilibrium, population structure (Fst, Amova) and equilibrium
+    (HWE), haplotype networks, minimum spanning tree and network, and
+    median-joining networks."""
+
+    homepage = "http://ape-package.ird.fr/pegas.html"
+    url      = "https://cloud.r-project.org/src/contrib/pegas_0.14.tar.gz"
+    list_url = "https://cloud.r-project.org/src/contrib/Archive/pegas"
+
+    maintainers = ['dorton21']
+
+    version('0.14', sha256='7df90e6c4a69e8dbed2b3f68b18f1975182475bf6f86d4159256b52fd5332053')
+
+    depends_on('r@3.2.0:', type=('build', 'run'))
+    depends_on('r-ape@5.3-11:', type=('build', 'run'))
+    depends_on('r-adegenet', type=('build', 'run'))