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-rw-r--r--var/spack/repos/builtin/packages/r-pegas/package.py30
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diff --git a/var/spack/repos/builtin/packages/r-pegas/package.py b/var/spack/repos/builtin/packages/r-pegas/package.py
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+# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+from spack import *
+
+
+class RPegas(RPackage):
+ """Population and Evolutionary Genetics Analysis System
+
+ Functions for reading, writing, plotting, analysing, and
+ manipulating allelic and haplotypic data, including from VCF files,
+ and for the analysis of population nucleotide sequences and
+ micro-satellites including coalescent analyses, linkage
+ disequilibrium, population structure (Fst, Amova) and equilibrium
+ (HWE), haplotype networks, minimum spanning tree and network, and
+ median-joining networks."""
+
+ homepage = "http://ape-package.ird.fr/pegas.html"
+ url = "https://cloud.r-project.org/src/contrib/pegas_0.14.tar.gz"
+ list_url = "https://cloud.r-project.org/src/contrib/Archive/pegas"
+
+ maintainers = ['dorton21']
+
+ version('0.14', sha256='7df90e6c4a69e8dbed2b3f68b18f1975182475bf6f86d4159256b52fd5332053')
+
+ depends_on('r@3.2.0:', type=('build', 'run'))
+ depends_on('r-ape@5.3-11:', type=('build', 'run'))
+ depends_on('r-adegenet', type=('build', 'run'))