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| author | Audrey Thoma <las_thoma15@iastate.edu> | 2017-11-20 22:51:35 -0600 |
|---|---|---|
| committer | Massimiliano Culpo <massimiliano.culpo@googlemail.com> | 2017-11-20 21:51:35 -0700 |
| commit | 8b2abfb28be0f118595413b8a72bf546f1100e1a (patch) | |
| tree | 470ae7653750bd8fac64bc7cde5b20149830b85f /var | |
| parent | 70ce7e209906e80b53248944410e6aea0202a0a0 (diff) | |
| download | spack-8b2abfb28be0f118595413b8a72bf546f1100e1a.tar.gz spack-8b2abfb28be0f118595413b8a72bf546f1100e1a.tar.bz2 spack-8b2abfb28be0f118595413b8a72bf546f1100e1a.tar.xz spack-8b2abfb28be0f118595413b8a72bf546f1100e1a.zip | |
masurca: new package (#6386)
Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/masurca/package.py | 46 |
1 files changed, 46 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/masurca/package.py b/var/spack/repos/builtin/packages/masurca/package.py new file mode 100644 index 0000000000..519ba29e11 --- /dev/null +++ b/var/spack/repos/builtin/packages/masurca/package.py @@ -0,0 +1,46 @@ +############################################################################## +# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * +import distutils.dir_util + + +class Masurca(Package): + """MaSuRCA is whole genome assembly software. It combines the efficiency + of the de Bruijn graph and Overlap-Layout-Consensus (OLC) + approaches.""" + + homepage = "http://www.genome.umd.edu/masurca.html" + url = "ftp://ftp.genome.umd.edu/pub/MaSuRCA/latest/MaSuRCA-3.2.3.tar.gz" + + version('3.2.3', 'd9b4419adfe6b64e42ce986253a50ff5') + + depends_on('perl', type=('build', 'run')) + depends_on('boost') + depends_on('zlib') + + def install(self, spec, prefix): + installer = Executable('./install.sh') + installer() + distutils.dir_util.copy_tree(".", prefix) |