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* Update the krell institute products to use the latest features of spack for building on cluster platforms.
* Address travis error messages and resubmit the pull request.
* Update the contents of openspeedshop package.py so it passes the flake8 tests.
* Fix flake8 error-whitespack issue in mrnet package.py file.
* Add updates based on spack reviewer feedback.
* More fixes based on comments from reviewers. Switch using extend to using append, remove additional setting of PATH and LD_LIBRARY_PATH that should not be required due to RPATH.
* More review related changes. Update MPIOption.append lines and take out xercesc references.
* Create a base options function for common openspeedshop base cmake options to reduce redundencies.
* Add libxml2+python depends on to get around issues with the libxml2 package file.
* Using boost over 1.60.0 causes compile errors. This is a known boost bug. Also, dyninst-9.2.0 is set to be the vesrion of dyninst to use with OSS, as of now. The newer version fails to build.
* Fix bad syntax in specifying the boost version range.
* Update the version numbers for the krell institute components and tools: cbtf and openspeedshop.
* Do not build glib for qt3, it is not needed and causes build problems at this time anyway.
* A fix was added for setting LD_LIBRARY_PATH in the qt3 build, but if LD_LIBRARY_PATH is not set the qt build fails. So so check and set LD_LIBRARY_PATH if not set, update if it is set.
* Update the fix for qt3 build by setting LD_LIBRARY_PATH instead of checking for whether it is set or not per Adams comment that spack clears LD_LIBRARY_PATH.
* A fix was added for setting LD_LIBRARY_PATH in the qt3 build, but if LD_LIBRARY_PATH is not set the qt build fails. So so check and set LD_LIBRARY_PATH if not set, update if it is set.
* Trim comments to fit more concisely.
* Fix tabs versus spaces and swap if and else clause check from a negative to a positive check.
* Fix issues with the cbtf-argonavis build, update to use dyninst-9.3.2, fixes to openspeedshop package build.
* Fix issues with the cbtf-argonavis package.py files related to comments.
* Add changes for changing the krell packages from Package to CMakePackage.
* Add better changes for changing the krell packages from Package to CMakePackage.
* Add more modifications for changing the krell packages from Package to CMakePackage.
* Add additional modifications for changing the krell packages from Package to CMakePackage and fixing Travis erros
* Fix new travis errors.
* Fix new travis errors.
* Add more changes for PR 4765.
* Add more refinements to the conversion from Package to CMakePackage.
* Fix new travis errors.
* Add dependencies for MPI to be passed to cbtf-krell, so it can build the MPI collectors requested by the builder of openspeedshop.
* Remove extra unnecessary routine to adjust build arguments. Fix if-else clause issue.
* Fix more flake issues caused by last changes.
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* Initial work on flag trapping using functions called <flag>_handler and default_flag_handler
* Update packages so they do not obliterate flags
* Added append to EnvironmentModifications class
* changed EnvironmentModifications to have append_flags method
* changed flag_val to be a tuple
* Increased test coverage
* added documentation of flag handling
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* new package: cns-nospec
* made changes as suggested and added proxy-app tag
* updated edit()
* adjusted logic for '+debug'
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* new package: amr-exp-parabolic
* removed boilerplate and added tag
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* removed the tags as per comment in PR# 4749
* addressed above comments
* changed fortran compiler.
* added proxy application tags.
* added tags by removing them from description.
* addressed comments
* used join_path instead of path concat.
* added tags and other minor changes.
* removed tags from description.
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* new package PENNANT
* made adjustments based on comments
* edited logic for mpi variant
* replaced with 'else'
* prefix.bin instead of 'bin'
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* Added Proxy App CoSP2
* Updated the PATH
* Updated MPI Fix
* Fixed Issues
* Fixed Issues with compiler and Flake8
* Enhanced block of code.
* Intended
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* Added Proxy App CoSP2
* Added Proxy App CoHMM
* Updated PATH cohmm
* Chages Fixing Minor issues
* Minor Fix git add cohmm/package.py
* Updated
* Resolved TAG Conflict
* Updated based on the codecov failure
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* new package: CLAMR
* changed from bool variants to single value variants and corresponding logic in build_type and cmake_args
* lowercase variant values
* updated conditionals for variants
* adjusted url and docstring
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* New Package SimpleMOC
* addressed comments
* removed tags as per PR# 4749
* flake8 fix.
* travis fix.
* added proxy app tags to description.
* added mpi and openmpi depedency.
* removed openmpi depdedency.
* addressed comments.
* adding openmp flag conditionally.
* flake 8 fix for tabs.
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* new package: SMC
* removed template and added proxy-app tag
* added comp variant in edit()
* edited comp variant in edit()
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* updated py-pylint version
* setuptools required at runtime for pkg_resources
* fixed url for updated pylint
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* poamsa: new package
* fixed version specs
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* new package to be added: NuT
* removed cmake_args() and made other changes as suggested
* Added setup_environment()
* PEP8 compliant
* edited version name, build_targets, and files/directories to install
* corrected executable directory
* compiler dependencies based on version
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* busco: new package
* busco: fixing fussy paths
* removing paths, probably was a problem with our module setup
* fixed dep type
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* raxml: new package
* changed compiler variable
* removing if statement regarding intel compiler
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* New Package: miniMD
* Minor Changes
* Corrected Dependency
* Renamed Executable
* Change to use build directory directly
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* New Package: OpenMC
* comments addressed.
* comments addressed.
* changed 'os.makedirs' to 'mkdirp'
* flake 8 fix.
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* Change directives to allow open-ended variants more easily
* make None default to open-ended
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* Change path to CMakeLists.txt to be relative to root, not pwd
* Changes requested during code review
* Revert back to old naming of root_cmakelists_dir
* Make relative directory more clear in docs
* Revert change causing build_type AttributeError
* Fix forgotten abs_path var
* Update CLHEP with new relative path
* Update more packages with new root_cmakelists_dir syntax
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* package: removed default no-op patch fixes #4085
* do_patch: handles NoSuchMethodError nicely
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somatic-sniper installs its own copy of samtools, which needs curses.
I'm not sure why I didn't stumble on this in my dev environment, but I
just stumbled over it in a standalone build.
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* New Package: miniXyce
* Removed Tag
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(#4648)
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* codar-cheetah: Experimentation harness from the ECP CODAR project
* codar-cheetah: conforming to flake8
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* mrbayes: new package
* fixing beagle version
* fixing typos
* fixing libbeagle dependency types
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* New Package: miniGhost
* Fixed empty string formatting
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The 4.X branches are now on the homepage, so we take the GitHub release
artifact (careful: take their upload, not the automatic tarball).
Adds a development version of ZeroMQ.
Requires a autogen run, as for all their unreleased versions,
and the pkg-config fix in #4736
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Always sets the `pkg-config` environment hint for
autotools.
Required dependency for `autoreconf` of ZeroMQ when
build from source (e.g. v4.2.2) via autotools in `autogen.sh`
step for `autoreconf`.
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Lightly tested on CentOS 7 with `python@2.7.13` and `python@3.6.0`.
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* Add package for r-ada, update r-rpart version
Adds a package for r-ada.
Update the version for r-rpart because the previous version is
no longer at that URL. The previous version *is* in the Archive,
but list_url does not seem to be able to find it.
* Clean up FIXMEs (blush)
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