summaryrefslogtreecommitdiff
AgeCommit message (Collapse)AuthorFilesLines
2017-07-26snptest: new package (#4900)Audrey Thoma1-0/+39
* snptest: new package * fixed version things * fixed install phase
2017-07-26Improve version detection for URLs with dynamic after version (#4902)Adam J. Stewart2-1/+4
2017-07-26Updated Namespace of BML Repository (#4910)Robert Pavel1-4/+4
2017-07-26added MPI dependency to Nekbone package (#4903)pkondamudi1-0/+5
* removed the tags as per comment in PR# 4749 * addressed above comments * changed fortran compiler. * added proxy application tags. * added tags by removing them from description. * addressed comments * used join_path instead of path concat. * removed the tags as per comment in PR# 4749 * addressed above comments * changed fortran compiler. * added proxy application tags. * added tags by removing them from description. * addressed comments * used join_path instead of path concat. * added tags. * changes to use MPI as depedency. * removed MPI as variant. * changed pointer to filtered makenek file. * flake 8 fix.
2017-07-26shortstack: new package (#4905)Audrey Thoma1-0/+45
2017-07-25Add universal build_type variant to CMakePackage (#4797)Adam J. Stewart46-319/+68
* Add universal build_type variant to CMakePackage * Override build_type in some packages with different possible values * Remove reference to no longer existent debug variant * Update CBTF packages with new build_type variant * Keep note on build size of LLVM
2017-07-25tmux should not set PKG_CONFIG_PATH (#4901)Sam Bateman1-13/+3
* fixes #967 * Version bump to 0.9.1 - Bugfixes for spack find - 0.9.1 can read specs from current develop. * Don't assume spack is in the path when building docs. * Remove PKG_CONFIG_PATH from tmux configure * Change tmux to AutotoolsPackage * Correct link to libtinfo in tmux
2017-07-25fix callpath bug (#4659)becker331-1/+3
* fix callpath bug I found while testing env/cc * fix hanging indent for flake
2017-07-25transdecoder: new package (#4895)Audrey Thoma1-0/+50
* transdecoder: new package * fixed package structure
2017-07-25transposome: new package (#4896)Audrey Thoma1-0/+37
2017-07-25trimgalore: new package (#4899)Audrey Thoma1-0/+44
2017-07-25fix config.guess patch for ppc64le (#4858)Gregory Lee1-15/+3
* fix config.guess patch for ppc64le * explicit patch for config.guess not required
2017-07-25cleaveland4: new package (#4894)Audrey Thoma3-0/+150
* cleaveland4: new package * fixing return line in viennarna url_for_version
2017-07-25tabix: new package (#4886)Audrey Thoma1-0/+50
* tabix: new package * fixed docs location
2017-07-25sumaclust: new package (#4884)Audrey Thoma1-0/+42
* sumaclust: new package * tweaking url and make specs
2017-07-25Update zstd version (#4873)Jimmy Tang1-4/+2
* Update zstd version * Change order of versions * Use MakefilePackage
2017-07-25Rename the gpu variant to cuda, this is to be consistent with other (#4890)Jimmy Tang1-4/+4
packages.
2017-07-24fix GobjectIntrospection on Darwin (#4872)Denis Davydov1-0/+3
* fix GobjectIntrospection on Darwin * minor
2017-07-24stacks: new package (#4875)Audrey Thoma1-0/+48
2017-07-24added new version of jdk 8u141-b15 (#4876)Stas Sergienko1-0/+2
2017-07-24swarm: new package (#4885)Audrey Thoma1-0/+41
2017-07-24structure: new package (#4879)Audrey Thoma1-0/+47
* structure: new pacakge * fixing package structure (not a pun)
2017-07-24subread: new package (#4882)Audrey Thoma1-0/+52
2017-07-24added new version of cdo (#4877)Stas Sergienko1-0/+2
2017-07-24stringtie: new package (#4878)Audrey Thoma1-0/+41
2017-07-24Change Version formatting properties and functions to return Version objects ↵Adam J. Stewart7-27/+138
(#4834) * Change version.up_to() to return Version() object * Add unit tests for Version.up_to() * Fix packages that expected up_to() to return a string * Ensure that up_to() preserves separator characters * Use version indexing instead of up_to * Make all Version formatting properties return Version objects * Update docs * Tests need to test string representation
2017-07-24Add a py-theano version from git repo (#4871)Jimmy Tang1-0/+1
2017-07-23Add cuda variant for mvapich2. (#4800)健美猫1-2/+13
* Add cuda variant for mvapich2. * Disable cuda for mvapich2 by default.
2017-07-23fix sphinx dependencies, add v1.6.3 (#4870)Stephen McDowell1-2/+13
2017-07-23Perl - allow package activation without PERL5LIB variable (#4540)Milton Woods1-9/+22
* perl: prepend default perl @INC path to support package activation * perl: remove stray comma from list of configure arguments * perl: final comma in configure arguments makes adding arguments safer This reverts commit fdc10cd611f525ebc31ca1953e048095b1c75350. * perl: add comment about modified @INC (thanks to George Hartzell) * perl: use self.prefix.lib and self.prefix.bin for clarity * perl: convert tabs added by editor to spaces for flake8 * perl: use new path syntax: prefix.lib.perl5 * perl: avoid line break before binary operator * perl: use compact spack syntax for perl executable
2017-07-23gBenchmark: Development Package (#4847)Axel Huebl2-51/+15
* gBenchmark: Development Package Add the development version (master branch) of `gBenchmark` * gBenchmark: Remove Duplicate Remove duplicate `gbenchmark` library and keep its patch to remove the shipped -Werror
2017-07-22Make testing spack commands simpler (#4868)Todd Gamblin13-398/+299
Adds SpackCommand class allowing Spack commands to be easily in Python Example usage: from spack.main import SpackCommand info = SpackCommand('info') out, err = info('mpich') print(info.returncode) This allows easier testing of Spack commands. Also: * Simplify command tests * Simplify mocking in command tests. * Simplify module command test * Simplify python command test * Simplify uninstall command test * Simplify url command test * SpackCommand uses more compatible output redirection
2017-07-21Savanna (#4856)Kshitij Mehta1-2/+3
Installing the stable version 0.5 through the checksummed tar.gz does not fetch the git submodule in the package. The submodule appears as an empty directory. Thus, clone the commit tagged as v0.5 using git to get around this issue * savanna: modified adios dependency spec * Replaced adios+staging with adios+flexpath+dataspaces * savanna: Enabling fortran support in adios by default * savanna: reverting to variant 'staging' for enabling all staging transports
2017-07-21sparta: new package (#4867)Audrey Thoma1-0/+46
* sparta: new package * fixing homepage
2017-07-21new package: miniGMG (#4849)jiseung1-0/+67
* new package: miniGMG * changed based on comments * removed cuda version
2017-07-21revbayes: trying this again (#4861)Audrey Thoma1-0/+62
2017-07-21sortmerna: new package (#4866)Audrey Thoma1-0/+44
2017-07-21added new pruners-ninja version (#4859)Gregory Lee1-0/+1
2017-07-21lmdb: Update to 0.9.21 (#4830)Michael Kuhn1-32/+30
Convert to MakefilePackage and add pkg-config file.
2017-07-21singularity: new package (#4852)Audrey Thoma1-0/+40
2017-07-21smalt: new package (#4853)Audrey Thoma1-0/+34
2017-07-21seqprep: new package (#4850)Audrey Thoma1-0/+39
2017-07-21sickle: new package (#4851)Audrey Thoma1-0/+43
2017-07-21New Package: C-Ares (#4840)Axel Huebl1-0/+41
Adds the c-ares library, a C library for asynchronous DNS requests. Required for the google gRPC library.
2017-07-21salmon: new package (#4833)Audrey Thoma1-0/+41
2017-07-21satsuma2: new package (#4838)Audrey Thoma1-0/+41
2017-07-20py-cdat-lite: ensure that RPATH includes netcdf (#4521)Milton Woods1-0/+11
2017-07-20add mesa +swrender variants (gallium software/off-screen rendering) (#4602)Mark Olesen1-13/+64
- +swrender variant lets you compile an off-screen only version for software rendering on clusters. - +swrender+llvm for using llvm for the software pipe - added newer versions (17.1 and 13.0) and corrected the url location to use the canonical location.
2017-07-20GTKorvo (#4657)Kshitij Mehta6-0/+266
* gtkorvo-atl: atl library from gtkorvo * gtkorvo-dill: dill library from gtkorvo * gtkorvo-cercs-env: cercs_env library from gtkorvo * gtkorvo-enet: Enet networking library from gtkorvo * libffs: FFS middleware communication library from GTKorvo * libevpath: EVPath high performance communication library from GTKorvo * gtkorvo-cercs-env: Added homepage and removed function configure_args * gtkorvo-cercs-env: Re-add of accidental removal of cmake_args function in previous commit * gtkorvo-enet: Removed configure_args since unused
2017-07-20New Package: SNbone. (#4754)pkondamudi1-0/+64
* removed the tags as per comment in PR# 4749 * addressed above comments * changed fortran compiler. * added proxy application tags. * added tags by removing them from description. * addressed comments * used join_path instead of path concat. * addressed comments * removed string formatting for LDFLAGS.