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2017-07-18package: removed default no-op patch (#4103)Massimiliano Culpo1-4/+5
* package: removed default no-op patch fixes #4085 * do_patch: handles NoSuchMethodError nicely
2017-07-18Repalce ftp:// with http:// for gdbm, mesa-glu and udunits2. (#4798)健美猫3-3/+3
2017-07-18somatic-sniper depends_in('curses') (#4796)George Hartzell1-0/+2
somatic-sniper installs its own copy of samtools, which needs curses. I'm not sure why I didn't stumble on this in my dev environment, but I just stumbled over it in a standalone build.
2017-07-18Add version 3.4.1 for r. (#4799)健美猫1-0/+1
2017-07-18pcma: new package (#4793)Audrey Thoma1-0/+43
2017-07-18New Package: tig (#4794)Adam Fidel1-0/+36
2017-07-17Package/minixyce (#4789)homerdin1-0/+78
* New Package: miniXyce * Removed Tag
2017-07-17partitionfidner: new package (#4791)Audrey Thoma1-0/+52
2017-07-17qhull: fix to work around a known issue of the library with intel compiler ↵Massimiliano Culpo2-0/+20
(#4648)
2017-07-17bsseeker2: new package (#4770)Audrey Thoma1-0/+49
2017-07-17codar-cheetah: Experimentation harness from the ECP CODAR project (#4658)Kshitij Mehta1-0/+45
* codar-cheetah: Experimentation harness from the ECP CODAR project * codar-cheetah: conforming to flake8
2017-07-17mrbayes: new package (#4757)Audrey Thoma2-0/+119
* mrbayes: new package * fixing beagle version * fixing typos * fixing libbeagle dependency types
2017-07-17New Package: miniSMAC2D (#4767)homerdin1-0/+78
2017-07-17Package/minighost (#4773)homerdin1-0/+94
* New Package: miniGhost * Fixed empty string formatting
2017-07-17ZeroMQ: 4.2.2 & develop (#4785)Axel Huebl1-0/+14
The 4.X branches are now on the homepage, so we take the GitHub release artifact (careful: take their upload, not the automatic tarball). Adds a development version of ZeroMQ. Requires a autogen run, as for all their unreleased versions, and the pkg-config fix in #4736
2017-07-17pkg-config: aclocal env (#4736)Axel Huebl1-4/+7
Always sets the `pkg-config` environment hint for autotools. Required dependency for `autoreconf` of ZeroMQ when build from source (e.g. v4.2.2) via autotools in `autogen.sh` step for `autoreconf`.
2017-07-15orfm: new package (#4769)Audrey Thoma1-0/+37
2017-07-15Add package for the Python regex library (#4771)George Hartzell1-0/+36
Lightly tested on CentOS 7 with `python@2.7.13` and `python@3.6.0`.
2017-07-15Add package for r-ada, update r-rpart version (#4772)George Hartzell2-0/+39
* Add package for r-ada, update r-rpart version Adds a package for r-ada. Update the version for r-rpart because the previous version is no longer at that URL. The previous version *is* in the Archive, but list_url does not seem to be able to find it. * Clean up FIXMEs (blush)
2017-07-15Add package for MuSE (#4779)George Hartzell1-0/+38
2017-07-15Add package for Somatic Sniper (#4778)George Hartzell1-0/+36
Lightly tested on CentOS 7.
2017-07-14New Package: miniFE (#4712)homerdin1-0/+80
* New Package: miniFE * Removed extra property, using variant value directly
2017-07-14Savanna (#4713)Kshitij Mehta1-0/+50
* savanna: Runtime framework for online workflow management from the ECP CODAR project * savanna: added version 0.5 * savanna: Copying the package contents to prefix as part of installation * savanna: Doing submodules=true for git checkout of develop version * savanna: removed dependency on adios@develop. depends on adios * Savanna: Converted package to MakefilePackage
2017-07-14New Package: Pathfinder (#4714)homerdin1-0/+55
* New Package: Pathfinder * Added index for String format * Changed to make Makefile edit more specific * Make Flake8 Happy * Removed unneeded conversion
2017-07-14Add package for freebayes (#4718)George Hartzell1-0/+51
* Add package for freebayes * Don't include url, must use git info. * Fix flake8 complaints
2017-07-14Add package for Sniffles (#4719)George Hartzell1-0/+42
* Add package for Sniffles * Wire up a manual install step The cmake infra doesn't install anything, so do it by hand. The binaries land in a location that embeds the version...
2017-07-14hybpiper: new package (#4720)Audrey Thoma2-0/+104
* hybpiper: new package and spades dependency * hybpiper: making flkae8 happy * hybpiper: fixing dependency errors * fixing python dep type * removing cmake from spade dependencies
2017-07-14Package/cloverleaf (#4759)homerdin1-0/+108
* New Package: CloverLeaf * Removed Tag and Added Documentation * Corrected Dependencies and Variant Values
2017-07-14New Package: Nekbone. (#4748)pkondamudi1-0/+52
2017-07-14New Package: EBMS (#4749)pkondamudi1-0/+46
2017-07-14libwebsockets: new versions (#4764)Axel Huebl2-1/+3
* libwebsockets: new versions both new versions fix a nasty bug leading to a hanging connection on connect. * ISAAC Server: Fix libwebsockets ISAAC server did hang in docker containers due to a bug in libwebsockets.
2017-07-14slepc: fix download url (#4763)Denis Davydov1-1/+1
2017-07-13New Package:XSBench (#4751)pkondamudi1-0/+59
* New Package:XSBench * minor changes * replaced extend() with append() * addressed comment. * removed tags as per PR# 4749
2017-07-13Add two python packages for editing mach-O headers. (#4725)Patrick Gartung2-0/+73
* Add two python packages for editing mach-O headers. Much faster than calling otool and install_name_tool directly * remove non-overriding function * autopep8
2017-07-13py-deeptools: new package and dependencies (#4717)Audrey Thoma5-0/+159
* py-deeptools: new package and dependencies * py-deeptools: fixing python things * missed a fix
2017-07-13New Package: CloverLeaf3D (#4705)homerdin1-0/+93
* New Package: CloverLeaf3D * Fixed Flake8 Mistake * Removed unnecessary check
2017-07-13graphmap: new package (#4707)Audrey Thoma1-0/+43
2017-07-13Adding OpenMP variant to Trilinos. Also building NetCDF with PNetCDF ↵Jon Rood1-19/+25
directly, for Trilinos. (#4687) * Adding OpenMP variant to Trilinos. Also building NetCDF with PNetCDF in Trilinos when necessary. * Adding runtime error for PNetCDF variant in Trilinos when necessary. Omitting unnecessary openmp variant for Trilinos in Nalu. * Changing variant checks to conflicts statements. * Adding comments to Trilinos package.
2017-07-13idba: new package (#4722)Audrey Thoma1-0/+48
2017-07-13infernal: new package (#4724)Audrey Thoma1-0/+49
2017-07-13last: new package (#4729)Audrey Thoma1-0/+39
2017-07-13maverick: new package (#4731)Audrey Thoma1-0/+48
2017-07-13Add package for daligner (#4734)George Hartzell1-0/+51
2017-07-13mcl: new package (#4732)Audrey Thoma1-0/+36
2017-07-13dealii: workaround for concretization bug (#4735)Denis Davydov2-2/+6
* dealii: workaround for concretization bug * trilinos: add Anasazi which got disabled recently
2017-07-13mitofates: new package and dependency libsvm (#4741)Audrey Thoma2-0/+84
2017-07-13 Added ASPA Proxy App (#4743)Akhil Reddy Patlolla1-0/+72
2017-07-12hpx: added new package (#4709)Christoph Junghans1-0/+49
2017-07-12Typo: submdoules -> submodules (#4716)George Hartzell1-1/+1
2017-07-11genometools: new package (#4706)Audrey Thoma1-0/+45
* genometools: new package * genometools: fixing perl dependency type
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