Age | Commit message (Collapse) | Author | Files | Lines | |
---|---|---|---|---|---|
2017-10-24 | 'spack install' can overwrite an existing installation (#5384) | Massimiliano Culpo | 4 | -52/+274 | |
'spack install' can now reinstall a spec even if it has dependents, via the --overwrite option. This option moves the current installation in a temporary directory. If the reinstallation is successful the temporary is removed, otherwise a rollback is performed. | |||||
2017-10-24 | slepc and petsc version updates (#5863) | Denis Davydov | 2 | -3/+2 | |
slepc: add 3.8.0 petsc: no longer prefer 3.7.7 | |||||
2017-10-24 | r-minfi: created new package (#5887) | Yifan Zhu | 1 | -0/+63 | |
2017-10-24 | Add a package: thrust. (#3729) | 健美猫 | 1 | -0/+40 | |
2017-10-24 | r-nlme: added list_url and version 3.1-131 (#5890) | Yifan Zhu | 1 | -0/+2 | |
2017-10-24 | r-genomicalignments: created new package (#5785) | Yifan Zhu | 1 | -0/+49 | |
* r-genomicalignments: created new package * r-genomicalignments: using git repo source instead | |||||
2017-10-24 | r-reshape: created new package (#5889) | Yifan Zhu | 1 | -0/+38 | |
2017-10-24 | r-data-table: added list_url and version 1.10.4-2 (#5888) | Yifan Zhu | 1 | -0/+2 | |
2017-10-24 | Fix bug in spack flake8 when no files differ from develop (#5898) | Todd Gamblin | 1 | -1/+4 | |
2017-10-24 | r-mass: Update version to 7.3-47 (#5885) | lingnanyuan | 1 | -2/+4 | |
2017-10-24 | r-acepack: Create new package. (#5884) | lingnanyuan | 1 | -0/+35 | |
2017-10-24 | r-latticeextra: Create new package. (#5883) | lingnanyuan | 1 | -0/+41 | |
* r-latticeextra: Create new package. * r-latticeextra: Update list_url. | |||||
2017-10-24 | r-htmltable: Create new package. (#5882) | lingnanyuan | 1 | -0/+47 | |
2017-10-24 | r-htmlwidgets: Update verion to 0.9 (#5881) | lingnanyuan | 1 | -3/+4 | |
2017-10-24 | r-checkmate: Create new package. (#5880) | lingnanyuan | 1 | -0/+39 | |
2017-10-24 | r-geoquery: created new package (#5879) | Yifan Zhu | 1 | -0/+44 | |
* r-geoquery: created new package * r-geoquery: added versioned dependency on r | |||||
2017-10-24 | r-knitr: Update version to 1.17. (#5878) | lingnanyuan | 1 | -1/+3 | |
2017-10-24 | r-httr: added list_url and version 1.3.1 (#5877) | Yifan Zhu | 1 | -0/+2 | |
2017-10-24 | r-rcpparmadillo: Create new package. (#5875) | lingnanyuan | 1 | -0/+38 | |
2017-10-24 | r-curl: added list_url and version 3.0 (#5874) | Yifan Zhu | 1 | -0/+2 | |
2017-10-24 | r-yaml: Update version to 2.1.14 (#5856) | lingnanyuan | 1 | -0/+2 | |
2017-10-24 | r-formatr: Update version to 1.5 (#5855) | lingnanyuan | 1 | -2/+4 | |
2017-10-24 | r-crayon: Update version to 1.3.4 (#5854) | lingnanyuan | 1 | -2/+4 | |
2017-10-24 | r-sourcetools: Create new package. (#5853) | lingnanyuan | 1 | -0/+38 | |
2017-10-24 | r-testit: Update version to 0.7 (#5852) | lingnanyuan | 1 | -1/+3 | |
2017-10-24 | r-markdown: Update version to 0.8. (#5851) | lingnanyuan | 1 | -1/+3 | |
2017-10-24 | r-base64: created new package (#5850) | Yifan Zhu | 1 | -0/+39 | |
2017-10-24 | r-illuminaio: created new package (#5849) | Yifan Zhu | 1 | -0/+39 | |
2017-10-24 | r-evaluate: Update version to 0.10.1. (#5847) | lingnanyuan | 1 | -2/+4 | |
* r-evaluate: Update version to 0.10.1. * r-evaluate: update list_url. | |||||
2017-10-24 | bioconductor update (#5786) | lingnanyuan | 22 | -47/+71 | |
* r-a4: Add r dependency and update url. * r-a4base: Add r dependency and update url. * r-a4classif: update url and add r dependency. * r-a4core: Update url and add r dependency. * r-a4preproc: Update url and add r dependency. * r-a4reporting: Update url and add r dependency. * r-abaenrichment: Update url and add r dependency. * r-absseq: Update url and add r dependency. * r-acgh: Update url and add r dependency. * r-acme: Update url and add r dependency. * r-adsplit: Update url and add r dependency. * r-affxparser: Update url and add r dependency. * r-affycomp: Update url and add r dependency. * r-affycompatible: Update url and add r dependency. * r-affycontam: Update url and add r dependency. * r-annaffy: Update url and add r dependency. * r-annotate: Update url and add r dependency. * r-annotate: Update url and add r dependency. * r-annotationdbi: Update url and add r dependency. * r-genefilter: Update url and add r dependency. * r-mlinterfaces: Update url and add r dependency. * r-limma: Update url and add r dependency. * r-multtest: Update url and add r dependency. * r-a4classif: Correct format. * r-affycomp: Correct error. | |||||
2017-10-24 | r-siggenes: new package (#5831) | Yifan Zhu | 1 | -0/+42 | |
* r-siggenes: created new package * deleted extra indent | |||||
2017-10-24 | r-affyrnadegradation: Create new package. (#5830) | lingnanyuan | 1 | -0/+42 | |
2017-10-24 | r-affyqcreport: Create new package. (#5829) | lingnanyuan | 1 | -0/+46 | |
2017-10-24 | r-nor1mix: created new package (#5828) | Yifan Zhu | 1 | -0/+39 | |
2017-10-24 | r-affyplm: Create new package. (#5827) | lingnanyuan | 1 | -0/+46 | |
2017-10-24 | r-affypdnn: Create new package. (#5826) | lingnanyuan | 1 | -0/+38 | |
2017-10-24 | r-beanplot: created new package (#5825) | Yifan Zhu | 1 | -0/+36 | |
* r-beanplot: created new package * correct according to flake8 | |||||
2017-10-24 | Updated external package versions. (#5833) | Aaron Fisher | 1 | -3/+1 | |
2017-10-24 | r-bumphunter: new package (#5824) | Yifan Zhu | 1 | -0/+50 | |
* r-bumphunter: created new package * r-bumphunter: added description | |||||
2017-10-24 | Update for 'hdf5'. (#5790) | Sergey Kosukhin | 2 | -52/+55 | |
* Refactoring for 'hdf5'. * Remove 'unsupported' variant. | |||||
2017-10-24 | go: Update to 1.9.1 (#5868) | Michael Kuhn | 1 | -0/+1 | |
2017-10-24 | do not use 'l' as a variable name, to appease new flake8 version | Todd Gamblin | 8 | -55/+53 | |
- new E741 flake8 checks disallow 'l', 'O', and 'I' as variable names - rework parts of the code that use this, to be compliant - we could add exceptions for this, but we're trying to mostly keep up with PEP8 and we already have more than a few exceptions. | |||||
2017-10-24 | Fix bare 'except:' to placate errors in new flake8 version. | Todd Gamblin | 17 | -27/+27 | |
- fixes E722 errors from latest version of flake8 - requires us to not use 'bare except:' and catch BaseException instead | |||||
2017-10-24 | log tests use tmpdir properly | Todd Gamblin | 1 | -30/+35 | |
2017-10-24 | fix bugs found with stricter flake8 rules | Todd Gamblin | 8 | -11/+19 | |
- When you don't use wildcards, flake8 will find places where you used an undefined name. - This commit has all the bugfixes resulting from this static check. | |||||
2017-10-24 | remove wildcards from make spack core and packages | Todd Gamblin | 85 | -161/+231 | |
- This removes all wildcard imports EXCEPT `from spack import *` in packages | |||||
2017-10-24 | flake8: no wildcards in core; only `import *` from spack in packages | Todd Gamblin | 4 | -29/+78 | |
There are now separate flake8 configs for core vs. packages: - core has a smaller set of flake8 exceptions - packages allow `from spack import *` and module globals - Allows core to take advantage of static checking for undefined names - Allows packages to keep using Spack tricks like `from spack import *` and dependencies setting globals for dependents. | |||||
2017-10-24 | add newlines at end of some package files | Todd Gamblin | 6 | -6/+6 | |
2017-10-24 | add --all option to `spack flake8` | Todd Gamblin | 1 | -14/+41 | |
- `-a`/`--all` causes flake8 to run on all files rather than just different ones. | |||||
2017-10-23 | package: remove bare except statements (#5896) | scheibelp | 1 | -2/+2 | |