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2023-06-26llvm: fix build against libstdc++ 13 (#38329)Martin Aumüller1-0/+7
llvm @13-15 is required for ispc, but fails to build with GCC 13. 14.0.6 and 15.0.7 built successfully with upstream patch, 13.0.1 still fails. Thus upstream patch is applied to 14 and 15 only.
2023-06-26ufs-utils: update urls, versions, and dependencies (#37255)Alex Richert1-4/+9
2023-06-26tests/heffte/tasmanian: convert to new stand-alone test process (#35750)Tamara Dahlgren2-119/+37
2023-06-26cromwell: add v85 (#38427)George Young1-3/+8
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2023-06-26netcdf-c: apply patches (#38324)Sergey Kosukhin1-0/+19
* netcdf-c: fix building on macOS * netcdf-c: add patch fixing multi-threaded HDF5 calls * netcdf-c: update patch url
2023-06-26mmseqs2: patching to support building with %gcc@13: (#38296)George Young1-0/+8
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2023-06-26scotch: add new variants + bison version min. (#37958)Cameron Book1-3/+5
2023-06-26ginkgo: add version 1.6.0 (#38439)Terry Cojean1-4/+3
2023-06-26acfl: remove version 23.04 (#38363)Annop Wongwathanarat1-34/+0
2023-06-26armpl-gcc: remove version 23.04 (#38362)Annop Wongwathanarat1-52/+1
2023-06-26py-python-lzo: add 1.15 (#38418)George Young1-1/+2
* py-python-lzo: add 1.15 * Update package.py --------- Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2023-06-26demuxlet: add new package (#38425)snehring1-0/+35
2023-06-26spectre: add v2023.06.19 (#38474)SXS Bot1-0/+3
Co-authored-by: sxs-bot <sxs-bot@users.noreply.github.com>
2023-06-26tests/*mpi*: convert to new stand-alone test process (#35802)Tamara Dahlgren3-135/+99
2023-06-26Add raw attribute to env.set command (#38465)Xavier Delaruelle1-0/+16
Update `env.set` command and underlying `SetEnv` object to add the `raw` boolean attribute. `raw` is optional and set to False by default. When set to True, value format is skipped for object when generating environment modifications. With this change it is now possible to define environment variable whose value contains variable reference syntax (like `{foo}` or `{}`) that should be set as-is. Fixes #29578
2023-06-26acts: ensure Python_EXECUTABLE uses ^python when +python (#38540)Wouter Deconinck1-0/+4
By default, `find_package(Python)` searches from highest version to lowest version, identifying the highest version that satisfies the requirements. This means that `/usr/bin/python3.11` will be found before `$(spack location -i python)/bin/python3.10`, even when other packages have been built with the `python` in spack. This ensures that the `python` dependency is explicitly the `python` version that is used.
2023-06-26py-scipy: add v1.11.0 (#38546)Adam J. Stewart3-10/+25
Co-authored-by: adamjstewart <adamjstewart@users.noreply.github.com>
2023-06-26MOLGW: add new package (#37878)Fabien Bruneval1-0/+112
2023-06-26bzip2: add pkg-config file (#38355)is-a-gamer1-0/+19
Co-authored-by: HongZhi He <a13041902330@outlook.com>
2023-06-25libxml2: convert to new stand-alone test process (#37694)Tamara Dahlgren1-35/+82
2023-06-24ascent: add optional occa dep (#38426)Cyrus Harrison1-0/+13
Co-authored-by: cyrush <cyrush@users.noreply.github.com>
2023-06-24gmap-gsnap: updating to 2023-06-01 (#38428)George Young1-0/+6
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2023-06-24circe2: add new package (#38491)Thomas Madlener1-0/+42
2023-06-24apptainer: add squashfuse dep (#38499)snehring1-0/+1
2023-06-24etsf-io: convert to new stand-alone test process (#35746)Tamara Dahlgren1-19/+6
2023-06-24gaudi: new versions 36.[11-14] (#38498)Wouter Deconinck1-0/+4
2023-06-24hpctoolkit: convert to new stand-alone test process (#35752)Tamara Dahlgren1-15/+20
2023-06-24clp and osi depend on pkgconfig (#31505)miheer vaidya2-0/+2
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com> Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2023-06-24GSI-ncdiag: add v1.1.0 and v1.1.1. (#38196)David Huber1-1/+3
Co-authored-by: [David Huber] <[david.huber@noaa.gov]>
2023-06-24libzmq: Fix static assertion failure with gcc-13 (#38391)Dennis Klein1-0/+9
2023-06-24pfunit: fix the max_array_rank variant definition (#38528)Matthew Thompson1-2/+2
2023-06-24DMTCP: add v3.0.0. (#38307)Kapil Arya1-1/+3
2023-06-24lammps: new verisons (#38532)Richard Berger1-4/+6
2023-06-24Fixes openmpi configure args for multinode execution on slurm (#38403)Gurkirat Singh1-5/+15
Remove `--enable-mca-no-build=btl-uct` check for ucx spec as it is already fixed in the openmpi open-mpi/ompi#6666
2023-06-24range-v3: remove overbroad boost dependence (#38539)Chris Green1-8/+10
Co-authored-by: greenc-FNAL <greenc-FNAL@users.noreply.github.com>
2023-06-23libEnsemble: add v0.10.0 (#37954)Stephen Hudson1-4/+6
* libEnsemble: add v0.10.0 * Make new deps required * Fixes to deps * Update var/spack/repos/builtin/packages/py-libensemble/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Fix build, run * Reorder required deps --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-06-23py-pytest: add 7.3.2 (#38522)Manuela Kuhn1-8/+8
* py-pytest: add 7.3.2 * [@spackbot] updating style on behalf of manuelakuhn * Swap py-importlib-metadata dependency order * Restrict python version for older versions
2023-06-23Add recipe for iterative-stats (#38039)mschouler1-0/+35
* Add recipe for iterative-stats * Fix branch name and remove comment * Add git link * Add package maintainer * Enforce multiple requested changes * Update var/spack/repos/builtin/packages/py-iterative-stats/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update checksum * Fix openturns dependency specification * Add python variant spec to openturns --------- Co-authored-by: Marc Schouler <marc.schouler@inria.fr> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-06-23Added version 0.33 (#38534)julian-zeidler1-0/+1
2023-06-23fix version dependency logic (#38535)G-Ragghianti1-1/+1
2023-06-23zlib-ng: add latest, default to drop in replacement of zlib (#37370)Harmen Stoppels1-6/+25
2023-06-23Add numa variant in ucx package (#38423)Gurkirat Singh1-1/+3
2023-06-22py-pytz: add 2023.3 (#38525)Manuela Kuhn1-0/+2
2023-06-22py-qmtest: add patch for the removed bdist_wininst class (#38253)Juan Miguel Carceller2-0/+23
Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2023-06-22py-python-gitlab: add 3.15.0 (#38524)Manuela Kuhn2-6/+13
2023-06-22Add 1606 (#38511)Paul R. C. Kent1-0/+1
2023-06-22Emblmygff3 (#38515)snehring2-0/+29
* py-bcbio-gff: adding new version 0.7.0 * emblmygff3: adding new package * emblmygff3: adding py-setuptools dep
2023-06-22rust: Add v1.70.0 and simplify package bootstrap (#38311)Alec Scott2-359/+209
* Add rust v1.70.0 and simplify package logic by moving bootstrap to dedicated package * Fix formatting of rust-bootstrap package file * Re-enable Rust as extendable * Add nightly version to rust and rust-bootstrap * Manually inject openssl certs into environment * Add master and beta versions to rust * Add additional documentation for using rust development releases * Remove @AndrewGaspar as maintainer
2023-06-22py-packaging: add 23.1 (#38417)Manuela Kuhn1-0/+1
2023-06-22VASP package: Zen4 Support (#36800)AMD Toolchain Support1-19/+89
* zen4 support for vasp * encourage openmp support in fftw/blas when +openmp * enable gamma and non-collinear builds
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