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2020-10-29Patch CMake version check in Umpire (#19590)David Beckingsale2-0/+16
* Patch CMake version check in Umpire * Update version constraint for cmake_version_check patch Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Add maintainers to Umpire Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-10-29[py-torch-nvidia-apex] added version 201019 and added dependency on p… ↵Jen Herting1-0/+2
(#19548) * [py-torch-nvidia-apex] added version 201019 and added dependency on py-pybind11 * [py-torch-nvidia-apex] changed versioning format * [py-torch-nvidia-apex] removed redundent version condition * [py-torch-nvidia-apex] removed condition on dependency
2020-10-29New package: py-cupy (#19468)Jen Herting1-0/+27
* [py-cupy] created template * [py-cupy] added dependencies * [py-cupy] switched to git based download for submodules * [py-cupy] added dependencies * [py-cupy] added homepage and description. removed fixmes * [py-cupy] updated to tarball from pypi
2020-10-29plplot:fix:　add: depends_on('libsm', type='link') (#19594)h-denpo1-0/+1
2020-10-29Gromacs: Remove a dependency that could never be enabled. (#19599)Rémi Lacroix1-1/+0
The `fft` variant was removed but not the associated dependency.
2020-10-29clingo+python extends python (#19585)Greg Becker1-0/+1
2020-10-29Adding AOCC support for M4 (#19572)AMD Toolchain Support1-7/+4
* Adding AOCC support for M4 * combining 4 if-statements into a single if-statement with or conditions * keeping parentheses around the or expressions * fixing flake8 test failures Co-authored-by: mohan babu <mohbabul@amd.com>
2020-10-29SLATE package: New versions of slate, blaspp, and lapackpp with CMake build ↵G-Ragghianti3-36/+32
support (#19587) * New versions of slate, blaspp, and lapackpp with CMake build support * Fixing formatting
2020-10-28launchmon: Fix for aarch64 (#19562)t-nojiri2-0/+1295
2020-10-28qt: Silence build and force `xmlpatterns` library on for Qt4 (#19591)Seth R. Johnson1-3/+7
For some mysterious reason Qt4 stopped building the xmlpatterns component, needed by some downstream packages. With this patch, the component successfully builds with ``` qt@4.8.7~dbus~debug~examples~framework~gtk~opengl~phonon+shared~sql~ssl~tools~webkit freetype=none arch=linux-rhel7-haswell %gcc@10.2.0 ```
2020-10-28pest suit + (#19458)manifest1-0/+27
* pestpp + * build -f default
2020-10-28PopLDdecay package + (#17802)manifest1-0/+28
* poplddecay bio * flake8 debug * bin PATH correction * build step opt * BUILD_PATH fix * retro implementation + style fix
2020-10-28Pbbam debug (#17803)manifest1-1/+1
* pbbam path fix * pbbam flake8 fix * sys var build_directory sub * pbbam flake8 fix
2020-10-28RAJA package: Don't set both CUDA_ARCH and CMAKE_CUDA_FLAGS (#19589)David Beckingsale1-2/+0
2020-10-28Update strelka (#19565)dunatotatos1-47/+13
* Update package.py Remove breaking patch. Patching the shebang is useless is the dependencies are properly loaded before execution. Furthermore, the long paths which can be generated when installing with Spack can exceed the maximum length of the shebang. * Add newer versions of strelka.
2020-10-28Remove unused dependency. (#19566)dunatotatos1-1/+0
Boost is not used to build Manta.
2020-10-28py-mmcv: fix Opencv detection. (#19567)Toyohisa Kameyama2-0/+30
2020-10-28Do not build XCFun tests (#19568)Roberto Di Remigio1-0/+1
2020-10-28Do not build MRCPP tests (#19569)Roberto Di Remigio1-0/+1
2020-10-28Add new package: mrchem (#19571)Roberto Di Remigio1-0/+47
2020-10-28openssl: Add version 1.1.1h (#19574)Dr. Christian Tacke1-0/+1
2020-10-27Add new minor version 1.2.1 for ButterflyPACK (#19554)Pieter Ghysels1-0/+1
2020-10-27asciidoc-py3 add docbook dependency and fix a enviroment variable problem ↵lorddavidiii3-3/+13
for docbook-{xml,xsl} (#19547) * asciidoc-py3: add docbook-{xml,xsl} dependency * docbook-{xsl,xml}: fix XML_CATALOG_FILES enviroment variable
2020-10-27New package: libcudf (#19110)Jen Herting1-0/+36
* [libcudf] created template * [libcudf] depends on cuda * [libcudf] set cmake dir * [libcudf] depends on boost * [libcudf] depends on py-pyarrow * [libcudf] depends on librmm * [libcudf] depends on dlpack * [libcudf] added more dependency information from https://github.com/rapidsai/libcudf/blob/v0.15.0/CONTRIBUTING.md#customizing-the-build * [libcudf] removed python dependencies * [libcudf] fixed url that got mangled in package renaming * [libcudf] added default build options from build.sh * [libcudf] added version 0.16.0a * [libcudf] removed version 0.16.0a as it's an alpha version * [libcudf] added homepage and description. removed fixmes * [libcudf] flake8 * [libcudf] arrow requires +orc * [libcudf] requires +parquet * [libcudf] checksum changed
2020-10-27New Package: py-rmm (#19104)Jen Herting1-0/+30
* [py-rmm] created template * [py-rmm] added dependencies * [py-rmm] setting build_directory * [py-rmm] added dependencies cuda and spdlog * [py-rmm] added homepage and description. removed fixmes * [py-rmm] added for loop for dependency versions * [py-rmm] flake8 * [py-rmm] updating upper range of python version * [py-rmm] removing python upper limit
2020-10-27bowtie2: Add version 2.4.2 (#19537)t-nojiri1-0/+2
2020-10-27Update package.py (#19513)adityakavalur1-3/+3
On Cori(Cray-XC40), I need to pass the entire path for the compilers, this is what is saved in c_compiler, cpp_compiler, f_compiler. Therefore, when for the MPI wrappers only the binary name is provided I run into the same issue. There is no drawback of passing the entire path, this is set by the user through the compiler path anyways.
2020-10-27Update MRCPP package.py (#19541)Roberto Di Remigio1-1/+3
2020-10-27ghostscript: fix: add: depends_on('krb5', type='link') (#19536)h-denpo1-0/+1
2020-10-27diamond: Add version 2.0.4 (#19535)t-nojiri1-1/+5
2020-10-27added -lpthread flag in kv/tests/CMakeLists.txt (#19533)Jungwon Kim1-2/+3
* added -lpthread flag in kv/tests/CMakeLists.txt * Update var/spack/repos/builtin/packages/papyrus/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-10-27modified:var/spack/repos/builtin/packages/ppopen-appl-bem-at/package.py (#19538)daichi-nishi1-4/+3
2020-10-27camp: Add missing checksum (#19543)Chuck Atkins1-1/+2
2020-10-26sbang: add support for php (#18299)Toyohisa Kameyama2-0/+65
PHP supports an initial shebang, but its comment syntax can't handle our 2-line shebangs. So, we need to embed the 2nd-line shebang comment to look like a PHP comment: <?php #!/path/to/php ?> This adds patching support to the sbang hook and support for instrumenting php shebangs. This also patches `phar`, which is a tool used to create php packages. `phar` itself has to add sbangs to those packages (as phar archives apparently contain UTF-8, as well as binary blobs), and `phar` sets a checksum based on the contents of the package. Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
2020-10-26netgauge: Fix for aarch64 (#19462)t-nojiri1-0/+7
* netgauge: Fix for aarch64 * netgauge: Revise the points indicated by the review.
2020-10-26New package: date (#19515)Geoffrey Gunter1-0/+49
* Add new package: date * date: resolve style conformance issues * date: explicitly disable some cmake options Explicitly disable CMake options corresponding to variant 'tzdb=download' * date: make more cmake options explicit * date: simplify defining cmake cli args
2020-10-26New package: py-minrpc (#19524)iarspider1-0/+18
* New package: py-minrpc * Delete package.py.save * Update var/spack/repos/builtin/packages/py-minrpc/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-10-26packages/phist: fix incorrect git url (#19527)jthies1-1/+1
Co-authored-by: Thies <thie_jo@fe-store01.sc.bs.dlr.de>
2020-10-26package/gunrock add v1.2 (#19516)Sinan1-3/+3
* package/gunrock add v1.2 * Update var/spack/repos/builtin/packages/gunrock/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: sbulut <sbulut@3vgeomatics.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-10-26Add camp & BLT dependencies to Umpire (#19411)David Beckingsale2-1/+11
* Add camp & BLT dependencies to Umpire * Remove tests variant
2020-10-26sbang: put sbang in the install_tree (#11598)Patrick Gartung1-2/+2
`sbang` is not always accessible to users of packages, e.g., if Spack is installed in someone's home directory and they deploy software for others. Avoid this by: 1. Always installing the `sbang` script in the `install_tree` 2. Relocating binaries to point to the copy in the `install_tree` and not the one in the Spack installation. This PR also: - ensures that `sbang` is reinstalled if it is modified in Spack - adds tests - updates the way `gobject-introspection` patches Makefiles to support `sbang` Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
2020-10-26Update GATK versions. (#19521)dunatotatos1-0/+40
2020-10-26fujitsu-ssl2: update package.py (#19519)takanori-ihara1-60/+68
2020-10-26abseil-cpp: add versions 20200923.{1,2} (#19517)Geoffrey Gunter1-1/+3
2020-10-26New package: py-visdom (#19479)Jen Herting1-0/+30
* [py-visdom] created template * [py-visdom] added dependencies * [py-visdom] added homepage and description. removed fixmes * [py-visdom] added dependency on py-torchfile * [py-visdom] py-pillow -> pil * [py-visdom] fixed url format * [py-visdom] fixed url format
2020-10-26Add BLT package (#19410)David Beckingsale1-0/+30
* Add BLT package * Switch install function Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Add type='run' to cmake dependency Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Add git attribute to BLT Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-10-26cp2k, libxc, libint: fix builds with %intel, resp. intel-parallel-studio+mkl ↵Tiziano Müller3-39/+23
(#19522) * cp2k: locate correct include dir when using intel-parallel-studio+mkl for fftw-api * libxc: drop arch-specific intel opt. flags fixes #17794 * libint: drop arch-specific intel opt. flags, always build Fortran example with FC fixes #17509
2020-10-25package/pmdk add variants, version 1.9 (#19512)Sinan1-4/+13
* package/pmdk add variants, version 1.9 * add dependency * Update var/spack/repos/builtin/packages/pmdk/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: sbulut <sbulut@3vgeomatics.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-10-25phist: two new versions and disable ccache because we don't have a ↵jthies1-1/+4
dependency on ccache. (#19510) Otherwise, phist would look for ccache via cmake, which is not the spack way to do it. Co-authored-by: Thies <thie_jo@be-cpu03.sc.bs.dlr.de>
2020-10-24py-coverage: added v5.3 (#19509)Massimiliano Culpo1-0/+1
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