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# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class Fastqvalidator(MakefilePackage):
"""The fastQValidator validates the format of fastq files."""
homepage = "https://genome.sph.umich.edu/wiki/FastQValidator"
git = "https://github.com/statgen/fastQValidator.git"
version("2017-01-10", commit="6d619a34749e9d33c34ef0d3e0e87324ca77f320")
resource(
name="libStatGen",
git="https://github.com/statgen/libStatGen.git",
commit="9db9c23e176a6ce6f421a3c21ccadedca892ac0c",
)
depends_on("zlib-api", type="link")
patch("chromosome.patch", when="@2017-01-10", working_dir="libStatGen")
@property
def build_targets(self):
return ["LIB_PATH_GENERAL={0}".format(join_path(self.stage.source_path, "libStatGen"))]
@property
def install_targets(self):
return [
"INSTALLDIR={0}".format(self.prefix.bin),
"LIB_PATH_GENERAL={0}".format(join_path(self.stage.source_path, "libStatGen")),
"install",
]
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