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# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class Parallelio(CMakePackage):
"""The Parallel IO libraries (PIO) are high-level parallel I/O C and
Fortran libraries for applications that need to do netCDF I/O from
large numbers of processors on a HPC system."""
homepage = "https://ncar.github.io/ParallelIO/"
url = "https://github.com/NCAR/ParallelIO/archive/pio2_5_8.tar.gz"
git = "https://github.com/NCAR/ParallelIO.git"
maintainers("jedwards4b")
license("Apache-2.0")
version("2.6.2", sha256="c318894f0230197458917e932ec66301b4407a744df481e9c6a6d9d85f7e5ab1")
version("2.6.1", sha256="83d3108d2b9db8219aa6b6ee333cfc12b2a588bcfc781587df5f8b24a716a6eb")
version("2.6.0", sha256="e56a980c71c7f57f396a88beae08f1670d4adf59be6411cd573fe85868ef98c0")
version("2.5.10", sha256="fac694827c81434a7766976711ba7179940e361e8ed0c189c7b397fd44d401de")
version("2.5.9", sha256="e5dbc153d8637111de3a51a9655660bf15367d55842de78240dcfc024380553d")
version("2.5.8", sha256="f2584fb4310ff7da39d51efbe3f334efd0ac53ae2995e5fc157decccc0570a89")
version("2.5.7", sha256="af8af04e41af17f98f2c90b996ef0d8bcd980377e0b35e57b38938c7fdc87cbd")
version("2.5.4", sha256="e51dc71683da808a714deddc1a80c2650ce847110383e42f1710f3ba567e7a65")
version("2.5.3", sha256="205a0a128fd5262700efc230b3380dc5ab10e74bc5d273ae05db76c9d95487ca")
version("2.5.2", sha256="935bc120ef3bf4fe09fb8bfdf788d05fb201a125d7346bf6b09e27ac3b5f345c")
variant("pnetcdf", default=False, description="enable pnetcdf")
variant("timing", default=False, description="enable GPTL timing")
variant("ncint", default=False, description="enable netcdf integration", when="@2.6.0:")
variant("shared", default=True, description="build shared libraries")
variant("logging", default=False, description="enable verbose logging")
variant(
"fortran", default=True, description="enable fortran interface (requires netcdf fortran)"
)
variant("mpi", default=True, description="Use mpi to build, otherwise use mpi-serial")
# This patch addresses building pio2.6.1 with serial netcdf, the issue is netcdf filters
patch("serial261.patch", when="@2.6.1")
patch("remove_redefinition_of_mpi_offset.patch", when="@:2.5.6")
# This patch addresses an issue when compiling pio2.6.0 with a serial netcdf library.
# netcdf4 filters are only available with the parallel build of netcdf.
patch("pio_260.patch", when="@2.6.0")
depends_on("cmake@3.7:", type="build")
depends_on("mpi", when="+mpi")
depends_on("mpi-serial", when="~mpi")
depends_on("netcdf-c +mpi", type="link", when="+mpi")
depends_on("netcdf-c ~mpi", type="link", when="~mpi")
depends_on("netcdf-fortran", type="link", when="+fortran")
depends_on("parallel-netcdf", type="link", when="+pnetcdf")
resource(name="genf90", git="https://github.com/PARALLELIO/genf90.git", tag="genf90_200608")
resource(
name="CMake_Fortran_utils",
git="https://github.com/CESM-Development/CMake_Fortran_utils.git",
tag="CMake_Fortran_utils_150308",
)
# Allow argument mismatch in gfortran versions > 10 for mpi library compatibility
patch("gfortran.patch", when="@:2.5.8 +fortran %gcc@10:")
def cmake_args(self):
define = self.define
define_from_variant = self.define_from_variant
spec = self.spec
src = self.stage.source_path
args = [
define("NetCDF_C_PATH", spec["netcdf-c"].prefix),
define("NetCDF_Fortran_PATH", spec["netcdf-fortran"].prefix),
define("USER_CMAKE_MODULE_PATH", join_path(src, "CMake_Fortran_utils")),
define("GENF90_PATH", join_path(src, "genf90")),
define_from_variant("BUILD_SHARED_LIBS", "shared"),
define("PIO_ENABLE_EXAMPLES", False),
]
if spec.satisfies("+ncint"):
args.extend([define("PIO_ENABLE_NETCDF_INTEGRATION", True)])
if spec.satisfies("+pnetcdf"):
args.extend([define("PnetCDF_C_PATH", spec["parallel-netcdf"].prefix)])
if spec.satisfies("+fortran"):
args.extend([define("NetCDF_Fortran_PATH", spec["netcdf-fortran"].prefix)])
if spec.satisfies("+mpi"):
env["CC"] = spec["mpi"].mpicc
env["FC"] = spec["mpi"].mpifc
else:
env["FFLAGS"] = "-DNO_MPIMOD"
args.extend(
[
define("PIO_USE_MPISERIAL", True),
define("PIO_ENABLE_TESTS", False),
define("MPISERIAL_PATH", spec["mpi-serial"].prefix),
]
)
args.extend(
[
define_from_variant("PIO_ENABLE_TIMING", "timing"),
define_from_variant("PIO_ENABLE_LOGGING", "logging"),
define_from_variant("PIO_ENABLE_FORTRAN", "fortran"),
]
)
return args
def url_for_version(self, version):
return "https://github.com/NCAR/ParallelIO/archive/pio{0}.tar.gz".format(
version.underscored
)
def setup_run_environment(self, env):
env.set("PIO_VERSION_MAJOR", "2")
valid_values = "netcdf"
if self.spec.satisfies("+mpi"):
valid_values += ",netcdf4p,netcdf4c"
if self.spec.satisfies("+pnetcdf"):
valid_values += ",pnetcdf"
env.set("PIO_TYPENAME_VALID_VALUES", valid_values)
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